Table 1 Statistics of genome assembly and annotation
Sequencing | Modern hybrid sugarcane |
|---|---|
PacBio Sequel II HiFi sequencing | |
clean data (Gb) | 325 |
Sequencing depth (×) | 32.5 |
Average reads length (bp) | 13,145 |
Reads N50 (bp) | 13,219 |
Hi-C sequencing | |
Clean data (Gb) | 1175 |
Sequencing depth (×) | 117.5 |
Chromosomal-level genome assembly and annotation | |
Estimated genome size (Gb)/2 C | 9.0 |
Assembly size (Gb) | 10.4 |
% of estimated genome size | 115.6 |
Scaffold N50 (Mb) | 81.0 |
BUSCO completeness of assembly (%) | 99.7 |
Total number of genes/alleles | 370,103 |
BUSCO completeness of annotation (%) | 99.0 |
