Table 4 Extraction and sequencing details for the fresh mouse specimens

From: Century-old chromatin architecture revealed in formalin-fixed vertebrates

Mouse specimen

DNA yield (ng/mg tissue)

Raw read pairs (M)

Reads mapping (%)

Mean insert size (bp)

Mean genome coverage (X)

Lab1

28

282

82

178

29.2

Lab2

52

293

81

101

16.9

Lab3

45

249

83

97

14.2

Wild1

44

306

84

115

21.1

Wild2

21

262

93

124

21.4

Wild3

77

256

85

128

19.7

  1. Summary of the extraction and sequencing results for processing of 30 mg of fresh liver tissue from six mouse specimens with MNase treatment. We report DNA yield in ng/mg of tissue, the number of raw read pairs (millions), the percentage of raw reads mapping to the reference genome, the mean insert size of mapped reads in base pairs and the mean genome coverage after de-duplication and GC correction.
Back to article page