Table 1 Mapping results

From: Life history and ancestry of the late Upper Palaeolithic infant from Grotta delle Mura, Italy

Sequencing

# of Raw Reads prior C&M

Merged Reads (%)

Mapped Reads after DeDup

Human DNA (%)

Depth of Coverage

Genome coverage 1X (%)

CtoT (%)

GtoA (%)

Average fragment length (bp)

SNPs sites covered in 1240 K panel

Light-shotgun

10834630

68.68

523365

22.46

0.0078

0.77

17.37

17.19

47.78

–

Deep-shotgun

8.59E + 09

68.39

1.44E + 08

22.00

2.21

75.26

16.87

16.81

47.72

1080593

  1. Results of raw sequencing data, pre-processing and mapping on human reference genome (Hg19) results are reported for both shallow shotgun and deep sequencing.
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