Table 1 Comparison between Λ plot loop detections and HiCCUPS and snapFISH loop detections

From: Spectral-based detection of chromatin loops in multiplexed super-resolution FISH data

Chrm. #

Total Λ loop detections

Matching Λ loops/HiCCUPS loops

Matching SnapFISH loops/HiCCUPS loops

2

11

2/4

1/4

3

5+(9)

3/4

4/4

6

12

6/7

4/7

9

5

2/4

0/4

10

7

2/4

0/4

11

3

0/1

1/1

14

4

3/7

1/7

16

8

4/4

4/4

Tot.

55+(9)

22/35

15/35

  1. We compare the detections obtained by our approach to those discussed by Lee et al.24. For each of the considered chromosomes the total number of loops detected by the Λ-plot, and the fraction of HiCCUPS loops detected respectively by Λ-plot and snapFISH are given. Numbers in brackets correspond false positives due to the presence of missing lines in the dataset (see Supplementary Note 7).
Back to article page