Table 1 Genome statistics for the CS10 and BS3 de novo genome assemblies in comparison with the current reference assembly

From: The origin and maintenance of supergenes contributing to ecological adaptation in Atlantic herring

Samples

Genome size (Mb)

BUSCO64 scores (%)

No. contigs

N50 (kb)

N’s per 100 kb

CS10

773.1

90.7

3997

452.8

0

756.6

90.3

3228

472.4

0

BS3

779.2

92.4

3331

680.2

0

758.5

92.1

2725

661.8

0

Reference

725.7

87.4

26

30,022.5

110.8

786.3

93.3

1697

29,845.7

118.4

  1. Hap1 and hap2 are the two haplotype assemblies for the PacBio samples and their statistics are shown on the top and bottom row for each sample, respectively. In the case of the reference, the top row indicates assembly with scaffolded chromosomes, and the bottom row represents assembly with unplaced scaffolds in addition to the scaffolded chromosomes.
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