Fig. 6: Statistics for the catalogue of CNVs called by SurVIndel2 on the 1000 Genomes Project. | Nature Communications

Fig. 6: Statistics for the catalogue of CNVs called by SurVIndel2 on the 1000 Genomes Project.

From: SurVIndel2: improving copy number variant calling from next-generation sequencing using hidden split reads

Fig. 6

a, b Count of deletions and duplications in different superpopulations. Africans have more deletions and duplications compared to non-Africans: the median count was 7509 deletions and 5129 duplications for Africans vs 6294 deletions and 4478 duplications for non-Africans. The boxes contain values from the lower to the upper quartile, the line within the box is the median, and the whiskers extend by 1.5 times the interquartile range. Circles represent data points outside of the whiskers. c The size distribution for deletions and duplications detected in 1000 g, adjusted by their frequency in the population. For deletions, the expected peaks associated with ALU  (~ 310bp) and LINE  (~ 6000bp) deletions are visible. d Principal component analysis is able to clearly separate the superpopulations.

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