Fig. 2: Synteny and improvement of the T2T-goat1.0.
From: Telomere-to-telomere genome assembly of a male goat reveals variants associated with cashmere traits
a Syntenic and nonsyntenic regions between ARS1 (top) without telomeres and T2T-goat1.0 (bottom) with telomeres that are indicated by dark purple triangles. The collinearity between the two genome assemblies is shown as gray lines or blocks, and the inversions are shown in orange. The yellow bars represent the previously unresolved regions (PURs) in T2T-goat1.0. The gene density in 100-kb windows is shown as dark green bars. b The proportions of various repetitive elements in PURs. CenSat, satellite sequences in the centromeric region; SDs, segmental duplications; RepMask, repeats by RepeatMasker. c Syntenic and nonsyntenic regions of the X chromosome (ChrX) between Saanen_v1.0 (NCBI accession no. GCA_015443085.1) and T2T-goat1.0. Synteny and inversion are shown in gray and orange respectively.
