Fig. 6: Selection signatures for cashmere traits.
From: Telomere-to-telomere genome assembly of a male goat reveals variants associated with cashmere traits
a Selective signals based on SNPs and top 1% XP-CLR scores for cashmere trait. The plot is made based on the same method to that of Fig. 5b. b Venn plot of selective regions based on SNPs and top 1% XP-CLR scores for the cashmere trait between T2T-goat1.0 and ARS1 as references. c Selective region with tandem ABCC4 genes on Chr12 based on the XP-CLR score and π ratio of non-cashmere and cashmere goats. d Collinearity of the region with tandem ABCC4 genes on Chr12 between T2T-goat1.0 and ARS1. The selective region highlighted in blue bar is exactly located inside the region that was not assembled correctly in ARS1. e ABCC4 genes are in accordance with SDs and showed their expression in skin, blood, and spleen tissues. f Selective signals based on SVs and top 1% FST values between cashmere and non-cashmere goats. The plot is made based on the same method to that of Fig. 5b. g Venn plot of selective genes based on SVs and top 1% FST scores for the cashmere trait between T2T-goat1.0 and ARS1 as references.
