Fig. 3: Relationship between bootstrap support value and topological similarities across tree methods.
From: multistrap: boosting phylogenetic analyses with structural information
a For each dataset, the average bootstrap support value of the ME tree (y-axis) is plotted against its IMD counterpart (x-axis) and coloured by the RF topological distance (R = 0.72). The black overlaying line shows the running average RF (x-tree, y-tree, window size of 10) computed over the datasets sorted by IMD bootstrap support values (R = −0.67). b represents a similar analysis with ML (R = 0.77, R = −0.67). c The red line represents the fraction of branches that have an IMD bootstrap support value ≥X (x-axis) and occur in the ME trees (all datasets put together). The blue line indicates which fraction of the total number of IMD branches (8813 branches in total) are represented by each red point. d represents a similar analysis using ML trees as a reference.
