Table 2 The time-consuming of different pipelines across viral sequence sets with diverse lengths
From: VITAP: a high precision tool for DNA and RNA viral classification based on meta-omic data
Pipelines | Database version | 1-kb (h) | 5-kb (h) | 10-kb (h) | 20-kb (h) | 30-kb (h) |
|---|---|---|---|---|---|---|
vConTACT2 | VMR-MSL37 | 2.5 | 1.9 | 1.5 | 1.1 | 1.0 |
CAT | NCBI RefSeq209 | 1.3 | 1.1 | 1.0 | 0.9 | 0.7 |
PhaGCN2 | VMR-MSL37 | - | 9.1 | 6.1 | 2.4 | 1.8 |
geNomad | VMR-MSL37 | 0.2 | 0.2 | 0.2 | 0.2 | 0.2 |
VITAP | VMR-MSL37/NCBI RefSeq209 | 2.7 | 1.8 | 1.4 | 1.3 | 0.9 |
VPF-Class | VMR-MSL35 | 141.7 | 30.1 | 15.6 | 8.8 | 5.1 |
VITAP | VMR-MSL35 | 5.3 | 3.3 | 2.8 | 2.3 | 1.8 |
