Table 2 The 38 SDV from the Var.GWAS dataset validated using Vex-seq

From: Functional impact of splicing variants in the elaboration of complex traits in cattle

Chr	Position	rsID	REF	ALT	Gene symbol	Breed^a	F(ALT)^b	ΔPSI(H)	ΔPSI(M)
7	19984038	rs133242826	G	A	PIAS4	CHA	0.205	30.4	49.4
4	76710798	rs385063917	T	A	PPIA	NOR	0.113	N.S.	35.4
3	15041705	rs109482780	C	A	MSTO1	HOL	0.629	N.S.	18.0
5	91787772	rs135835897	C	A	PIK3C2G	MON	0.086	N.S.	16.0
18	44900183	rs136188475	A	G	WTIP	HOL	0.146	10.5	N.S.
3	15541059	rs135598974	T	C	ADAM15	HOL / MON	0.044 / 0.015	8.6	9.4
7	17999133	rs477089248	G	A	DENND1C	CHA	0.143	N.S.	8.7
3	16482608	rs135482846	T	A	CRTC2	HOL	0.126	6.0	10.2
14	687854	rs135457327	G	A	MROH1	NOR	0.066	7.4	N.S.
14	610004	rs134725785	G	A	DGAT1	NOR	0.068	7.0	N.S.
6	85424552	rs137349211	C	T	CSN1S1	NOR	0.290	N.S.	6.5
6	85537562	rs108967182	C	T	CSN1S2	MON / NOR	0.682 / 0.726	6.4	N.S.
15	77122984	rs109702869	T	C	ACP2	CHA	0.647	5.2	N.S.
20	33456383	rs133343716	C	T	MROH2B	HOL	0.305	N.S.	−6.1
14	446321	rs450686754	C	T	PPP1R16A	NOR	0.095	N.S.	−6.4
6	85428068	rs133474041	G	A	CSN1S1	NOR	0.295	N.S.	-6.8
6	85199301	rs208961079	C	T	SULT1B1	NOR	0.181	8.7	−24.4
6	83318905	rs209655753	G	A	STAP1	NOR	0.189	−8.1	N.S.
5	119386807	rs379016630	G	T	IL17REL	MON	0.143	−7.3	−9.6
2	1268402	rs382712574	G	A	TUBGCP5	CHA	0.101	−8.5	N.S.
6	36314103	rs110299924	G	A	HERC6	HOL	0.012	−7.0	−10.7
14	64187085	rs210809388	A	G	SPAG1	HOL	0.607	−8.9	N.S.
6	85468855	rs109381664	G	A	HSTN	HOL	0.353	N.S.	−9.0
11	103405870	rs133821799	G	T	CAMSAP1	HOL	0.708	−5.9	−12.3
14	1107890	rs458188308	C	T	PYCR3	HOL	0.075	N.S.	−11.1
20	32759553	rs208833611	C	T	OXCT1	HOL	0.693	N.S.	−11.5
6	85534747	rs110808655	T	C	CSN1S2	HOL	0.360	−12.3	N.S.
14	3033158	rs208093012	T	G	PTK2	MON	0.024	N.S.	−13.5
14	1044777	rs110323635	G	A	MAPK15	HOL / MON	0.538 / 0.270	−15.1	−11.8
18	44773142	rs41881032	G	A	GARRE1	HOL	0.829	N.S.	−15.2
14	1042664	rs473875358	G	A	MAPK15	NOR	0.034	−16.2	−15.0
6	36313547	rs110574592	G	T	HERC6	HOL	0.011	−24.6	−13.1
25	1684457	rs462748617	G	T	RAB26	CHA	0.079	−18.9	−20.1
19	61806013	rs383537478	C	T	ARSG	NOR	0.182	N.S.	−20.2
15	77368805	rs136792188	C	T	PTPMT1	CHA	0.405	N.A.	−25.4
14	1042682	rs109948623	A	G	MAPK15	HOL	0.524	−48.5	−21.5
14	1007601	rs110502044	G	A	IQANK1	HOL	0.273	−34.9	−43.9
19	40038954	rs133000623	T	C	STARD3	HOL	0.133	−41.3	−39.6

Only significant ΔPSI values are indicated (FDR <0.01).
NS not significant, NA not available, H HEK293T, M MAC-T.
^aCorresponds to the breed in which an association between the SDV and one or more phenotypes was measured.
^bCorresponds to the frequency of the alternative allele in this breed.

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Table 2 The 38 SDV from the Var.GWAS dataset validated using Vex-seq

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