Fig. 2: SDR protein kinase assay. | Nature Communications

Fig. 2: SDR protein kinase assay.

From: A general assay platform to study protein pharmacology using ligand-dependent structural dynamics

Fig. 2: SDR protein kinase assay.The alternative text for this image may have been generated using AI.

a ABL1 kinase domain bound to PD166326 inhibitor (dark blue) and myristic acid (red) (PDB: 1OPK), Nagar B et al. b SDR output of imatinib (blue square) or ATP (blue diamond) binding to 0.5 nM (open symbol) or 10 nM (solid symbol) ABL1-N-HiBiT kinase domain or imatinib inhibition of kinase activity (black circle) using Kinase-Glo Plus reagent (KGP). Error bars represent the SD, n = 3 experiments (Imatinib SDR) or n = 4 experiments (ATP SDR and imatinib kinase activity). c Correlation plot comparing the ABL1 KGP assay pIC50 vs pSDR50 (10 nM enzyme without ATP) for all inhibitors identified from the 128-member kinase inhibitor library. Colored symbols reference compounds discussed in Results section. For underlying data see Supplementary Data 4, 5, and Supplementary Fig. 9. d, e SDR output for myristate site ligands asciminib (red solid triangle) and GNF-5 (red open triangle) compared to imatinib (blue square) and nilotinib (open square) for ABL1-C- or -N-HiBiT, respectively. f Effect of allosteric ligands on enzyme catalysis (imatinib, black circle, asciminib, solid red triangle, and GNF-5, open red triangle). Error bars for d, e, and f represent the SEM, n = 2 technical replicates. g Protein kinase A (PKA) bound to H-89 inhibitor (dark blue) (PDB: 1YDT), Engh RA et al. h PKA enzyme activity (black circle) and SDR assay (blue square) CRC for H-89. Error bars represent the SD, n = 3 experiments i Correlation plot comparing the PKA KGP assay pIC50 to PKA SDR assay pSDR50 (without ATP). H-89 (blue square) and staurosporine (staur., red circle) indicated. See Supplementary Data 6 and Supplementary Fig. 11 for underlying data and compound information. Supplementary Data 46 supports panels (c, i). Source data are provided in a Source Data file.

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