Fig. 1: Study design and overview of the global high-quality Salmonella genome catalog.
From: A global atlas and drivers of antimicrobial resistance in Salmonella during 1900-2023
A Flowchart of the global atlas of AMR in Salmonella analysis pipeline. A total of 471,617 publicly available Salmonella genomes were downloaded (as of June 17, 2023), after screening by both bioinformatic software (including STSTR, SeqSero2, and MLST) and clear metadata, a total of 208,233 genomes were obtained. A total of 708 serovars and 3006 sequence types (STs) were detected. B Distribution of S. enterica genomes in six subspecies. C Distribution of S. enterica genomes in six continents. D Distribution of S. enterica genomes in different periods. E Overview of S. enterica genomes from different sources. F Overview of S. enterica genomes from different serogroups. G Top 20 serovars among the global Salmonella genome catalog. H Top 20 STs among the global Salmonella genome catalog. I A global map showing the geographic distribution of the 208,233 Salmonella genomes from 148 countries or regions across six continents. The map was generated using the MapChart (https://www.mapchart.net). Source data are provided as a Source Data file.
