Table 3 Summary of crystallographic structure determination statistics
From: Mapping of endosomal proximity proteomes reveals Retromer as a hub for RAB GTPase regulation
Data collection statistics | mVps29 – hDENND4C1189-1206 |
|---|---|
PDB ID | 8VOD |
Beamline | MX2 |
Space group | P 32 2 1 |
Resolution (Å) | 34.13 – 2.35 |
(2.43 – 2.35) | |
a, b, c (Å) | 42.90, 42.90, 172.74 |
α, β, γ (°) | 90.00, 90.00, 120.00 |
Data collection temp. (K) | 100 |
Wavelength (Å) | 0.95365 |
Total observations | 16,359 (1561) |
Unique reflections | 8279 (785) |
Completeness (%) | 99.7 (100.0) |
Rmerge+ | 0.028 (0.195) |
Rpim* | 0.028 (0.195) |
CC1/2 | 0.998 (0.891) |
<I/σ(I)> | 9.87 (2.35) |
Multiplicity | 2.0 (2.0) |
Molecule/asym | 1 |
Refinement statistics | – |
Rwork/Rfree (%)# | 18.78/25.22 |
No. protein atoms | 1590 |
Waters | 26 |
Wilson B (Å2) | 49.33 |
Average B (Å2)^ | 53.92 |
Protein | 53.84 |
Water | 48.12 |
rmsd bonds (Å) | 0.008 |
rmsd angles (°) | 1.07 |
Ramachandran plot: | – |
Favoured/outliers (%) | 95.38/0.51 |
