Table 2 High-abundance viral lncRNAs
From: Comprehensive resolution and classification of the Epstein Barr virus transcriptome
Transcript | Classification | TSS | Termination | Akata-BCR ONT reads | Akata-BCR ONT rank | Mutu-Zta ONT reads | Mutu-Zta ONT rank |
|---|---|---|---|---|---|---|---|
lncBALF5 | Early | BALF5 TSS | Overlapping BALF4 polyA | 6560 | 34 | 66,166 | 9 |
lncBALF3 | Leaky late | BALF3 TSS | Overlapping BALF2 polyA | 2906 | 46 | 1773 | 72 |
lncBGLF5 | Early | BGLF5 TSS | Overlapping BGLF4 polyA | 586 | 101 | 1595 | 79 |
lncBHRF1 | Leaky late | Alternative TSS | BHRF1 polyA | 17,461 | 18 | 30,798 | 19 |
lncBALF4 | Late | Alternative TSS | BALF4 polyA | 756 | 94 | 3746 | 46 |
lncBZLF1-v2 | Early | Alternative TSS | BZLF1 polyA | 854 | 87 | 1134 | 94 |
lncBORF2 | Leaky late | Alternative TSS | BORF2 polyA | 315 | 133 | 671 | 124 |
lncBZLF1-v3 | Early | Alternative TSS | BZLF1 polyA | 870 | 86 | 154 | 236 |
lncBZLF1-v1 | Early | Alternative TSS | BZLF1 polyA | 243 | 152 | 71 | 310 |
lncBVLF1 | Leaky late | Alternative TSS | BVLF1 polyA | 133 | 207 | 94 | 280 |
lncBZLF1 | Early | Alternative TSS | BZLF1 polyA | 692 | 98 | 0 | 1257 |
lncA73-LMP2 | Leaky late | Alternative TSS | LMP2 polyA | 0 | 793 | 1 | 1238 |
Cp-as | Late | Alternative TSS | Alternative polyA | 121 | 215 | 708 | 122 |
Qp-as | Late | Alternative TSS | BOLF1/BPLF1 polyA | 224 | 154 | 750 | 120 |
BaRF1-as | Early | Alternative TSS | Alternative polyA | 124 | 212 | 444 | 156 |
EBNA3B-as1 | Late | Alternative TSS | Alternative polyA | 581 | 102 | 1696 | 74 |
EBNA3B-as2 | Late | Alternative TSS | Alternative polyA | 183 | 170 | 511 | 144 |
