Table 1 Pf filamentous phage genes and relative function and interaction network
From: Crosstalk between inovirus core gene and accessory toxin-antitoxin system mediates polylysogeny
Pf4 locus tag (MPAO1) | Gene ID in Pf4 | Gene name in Pf4 | Pf6 locus tag (MPAO1) | Gene name in Pf6 | Product/Function | Regulation/ interaction | References |
|---|---|---|---|---|---|---|---|
MP_4506 | PA0714.1 | phrD | non-coding RNA | RhlR | |||
MP_4505 | PA0715 | pfrT | reverse transcriptase involves in the synthesis of SI Pf4 genome | ||||
MP_4504 | PA0716 | an ATPase with AAA domain | |||||
MP_4992 | pfkA | serine/threonine kinase, together with pfkB function as the toxin of KKP TA system | MvaU | ||||
MP_4991 | pfkB | serine/threonine kinase, together with pfkA function as the toxin of KKP TA system | MvaU | ||||
MP_4990 | pfpC | serine/threonine phosphatase, antitoxin of KKP TA system | |||||
MP_4503 | PA0716.1 | pf4r | MP_4989 | pf6r | repressor, maintenance of lysogeny | LasB, OxyR | |
MP_4502 | PA0716.2 | xisF4 | MP_4988 | xisF6 | excisionase and prophage activator | ||
MP_4501 | PA0717 | repG4 | MP_4987 | repG6 | unknown | this study | |
MP_4500 | PA0718 | pflM | MP_4986 | pflM | lysogeny maintenance | ||
MP_4499 | PA0719 | MP_4985 | unknown | ||||
MP_4498 | PA0720 | MP_4984 | single-strand DNA binding protein | ||||
MP_4497 | PA0721 | pfsE(gVII) | MP_4983 | pfsE(gVII) | minor capsid protein, superinfection exclusion | PilC, PilJ, PqsA | |
MP_4496 | PA0722 | gIX | MP_4982 | gIX | minor capsid protein | ||
MP_4495 | PA0723 | gVIII | MP_4981 | gVIII | major capsid protein | ||
MP_4494 | PA0724 | gIII | MP_4980 | gIII | minor capsid protein | PilJ, TolR, TolA | |
MP_4493 | PA0725 | gVI | MP_4979 | gVI | minor capsid protein | ||
MP_4492 | PA0726 | pftO4 | MP_4978 | pftO6 | phage zot-like assembly-export protein | ||
MP_4491 | PA0726.1 | pftP4 | MP_4977 | pftP6 | unknown | ||
MP_4490 | PA0727 | repF4 | MP_4976 | repF6 | replication initiator protein | UvrD, HU | |
MP_4489 | PA0728 | intF4 | MP_4975 | intF6 | integrase | ||
MP_4488 | PA0728. 1 | pfiA | antitoxin of PfiTA TA system | ||||
MP_4487 | PA0729 | pfiT | inhibition of Pf4, toxin of PfiTA TA system |
