Fig. 2: Genetic diversity and inbreeding. | Nature Communications

Fig. 2: Genetic diversity and inbreeding.

From: The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression

Fig. 2: Genetic diversity and inbreeding.The alternative text for this image may have been generated using AI.

a Heterozygosity of all Indonesian cattle and other cattle based on genotype data with non-variable sites included (See Methods). Boxplots indicate median (centre line), the 25th and 75th percentiles (box), and the highest and lowest values within the upper and lower quartiles ± 1.5* interquartile range, respectively (whiskers). b The total number of ROH segments (y axis) and the total length (Mb) of the genome in ROH (x axis) for all 231 samples. Each dot represents an individual. Sample sizes of the populations included in (a, b) are as follows: Aceh (n  =  25), Pesisir (n  = 24), Pasundan (n  =  24), Jabres (n  =  3), Madura (n  =  17), Sumba Ongole (n  =  14), Bali (n  =  19), Kupang (n  =  16), Australia (n  =  12), Captive banteng (n  =  5), Unknown-Indonesia (n  =  8), South Asian zebu (n  =  13), East Asian zebu (n  =  8), African zebu (n  =  10), Asian admixed (n  =  15), East Asian taurine (n  =  3), European taurine (n  =  10), and African taurine (n  =  5).

Back to article page