Fig. 5: Ancestry landscape of Indonesia cattle. | Nature Communications

Fig. 5: Ancestry landscape of Indonesia cattle.

From: The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression

Fig. 5: Ancestry landscape of Indonesia cattle.The alternative text for this image may have been generated using AI.

a Banteng ancestry across chromosome 13 in five cattle groups (Aceh, East Asian zebu, Madura, Pasundan, and Pesisir). Window-based scan of regions with extreme banteng ancestry using the proportion of inferred banteng SNPs from LOTER for each cattle group divided by the mean proportion per group. Pink shade marks regions in the genome-wide top 5% of the normalized LOTER summed across all groups. Similar plots for other chromosomes are in Supplementary Fig. 19. b LOTER and Ux results across cattle groups, showing windows in ASIP (chr 13, 62700000–64250000) and KIT region (chr 6, 64900000–71100000). The windows containing the actual coding region of ASIP and KIT are highlighted with the gene name. c Spearman correlations of banteng proportion in all windows of 50 Kb. d Upset plot of genes within top 5% highest banteng proportion windows for five admixed groups (Aceh, Pesisir, Pasundan, Madura, East Asian zebu). The number in each bar represents the number of genes between different breed comparisons. e Word clouds of the QTL terms contained within the top 5% of LOTER inferred banteng ancestry for each group. We included only the top 5% of terms overlapping most frequently with regions of high banteng ancestry for each cattle group.

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