Fig. 2: Comprehensive characterization of HERVs. | Nature Communications

Fig. 2: Comprehensive characterization of HERVs.

From: Single-cell eQTL mapping of human endogenous retroviruses reveals cell type-specific genetic regulation in autoimmune diseases

Fig. 2: Comprehensive characterization of HERVs.

a Length distribution of HERVs. b Distribution of HERVs across different families. c Proportion of genomic regions where HERVs are located. d Distribution of RNA-seq peaks in the KLHL9 and NFATC2IP locus. MLT1F1_dup14-chr9 is located in the intergenic region, and MER21B_dup25-chr16 is located in the antisense strand of the NFATC2IP intron. e Spearman’s correlation coefficient distribution of HERVs expression and nearby genes. Most HERVs show low correlation with related genes. f Left: expression levels of IDNK, VMAC and HERVs in five cell types. Right: distribution of RNA-seq peaks in the IDNK and VMAC loci.

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