Fig. 1: TEtrimmer workflow.
From: TEtrimmer: a tool to automate the manual curation of transposable elements
TEtrimmer is a multi-thread tool to automate the manual curation of TEs. It performs BLASTN searches of TE sequences retrieved from any TE consensus library against the respective genome and facilitates the generation of MSAs, MSA clustering, MSA sequence extension, MSA cleaning, TE boundary definition, and TE classification. Moreover, TEtrimmer provides detailed report plots and offers a graphical user interface (GUI) application to enable inspection and improvement of each output. Key features of TEtrimmer are highlighted by green background color. The trash bin icon was downloaded from Feather (https://feathericons.com/) and is licensed under MIT license (https://github.com/feathericons/feather?tab=MIT-1-ov-file#readme).
