Table 2 Table summarising all the ENCODE collections
Collection | Description | Total numbers* | Link |
|---|---|---|---|
ENCORE matrix | The ENCORE matrix summarises assays performed to study protein-RNA interactions of RNA-binding proteins (RBPs) encoded in the human genome. | 1832 | |
Immune cells matrix | Immune cells matrix summarises epigenomic profiling of human immune cells at different cellular fates and states, including activation, stimulation, and disease (MS). | 1736 | |
Stem cells differentiation matrix | Stem cells differentiation matrix summarises assays performed on 3 different stem cells (H1, H9, PGP) and their in vitro differentiated derivatives. | 781 | |
Deeply profiled cell lines matrix | The deeply profiled cell lines matrix represents data from cell lines that have been extensively studied within the ENCODE project. | 6474 | |
Protein Knockdown/Degron matrix | This matrix displays experiments that were performed on transformed HCT116 cell lines, utilising the auxin-inducible Degron (AID) system. | 252 | |
Human donor matrix | The Human Donor Matrix provides a matrix view of assays performed on biosamples derived from individual human donors. | 6978 | |
ENTEx matrix | The ENTEx matrix displays approximately 30 overlapping tissues from four individual donors, which were sampled in a collaborative effort with the GTEx Consortium. | 1567 | |
Rush Alzheimer’s Disease Study Matrix | Human brain samples collection page that includes data from multiple brain regions collected from individuals with various levels of cognitive impairment. | 664 | |
Reference Epigenomes matrix | Project data from human tissue, cell line, primary cell, and in vitro differentiated cell biosamples, organised as reference epigenomes following guidelines set out by IHEC. | 4145 | |
Mouse development matrix | The mouse development matrix displays embryonic to postnatal mouse developmental time course data across several tissues, organised as reference epigenomes. | 1934 |
