Table 1 Overview of the collected datasets in the present multicenter study

From: Multicenter evaluation of label-free quantification in human plasma on a high dynamic range benchmark set

Lab ID

LC system

MS

Gradient length [min]

DIAa

DDAa

A

Ultimate 3000

Exploris

50

yes (6)

yes (6)

A

EvoSep

Exploris

44

yes (6)

yes (6)

B

Ultimate 3000

HF

90

yes (6)

yes (6)

B

Ultimate 3000

HFX

90

yes (6)

yes (6)

C

nanoElute

timsTOF Pro

70

yes (6)b

yes (6)

D

Ultimate 3000

Orbitrap Eclipse

60

yes (6)

yes (6)

D

Vanquish Neo (MF)

Exploris

60

yes (6)

yes (6)

E

Ultimate 3000

Fusion Lumos

60

yes (6)

yes (6)

E

Vanquish Neo (MF)

Exploris

60

yes (5)

yes (5)

F

Vanquish Neo (MF)

Orbitrap Eclipse

60

 

yes (6)

G

Easy nLC 1200

timsTOF

30

yes (6)

yes (6)

G

Ultimate 3000

Exploris

48

yes (6)

yes (6)

H

Ultimate 3000

Orbitrap Eclipse

120

yes (6)

yes (6)

H

Ultimate 3000

Exploris

102

yes (6)

yes (6)

I

Easy nLC 1200

Exploris

44

yes (6)

 

J

Easy nLC 1200

timsTOF

44

yes (3)

 

K

M-Class (MF)

ZenoTOF

20

yes (6)

 

L

nanoElute

timsTOF Pro2

35.5

yes (3)

 

L

nanoAcquitiy

timsTOF Pro

11

yes (3)

 

L

Ultimate 3000

Exploris FAIMS

29

yes (3)

 

L

Ultimate 3000

Exploris

29

yes (3)

 
  1. aNumbers in brackets indicate the numbers of replicate measurements conducted, i.e., three to six replicates of each PYE sample were acquired per laboratory setting.
  2. bOne raw data file (C_nE_tTOF PYE3 B replicate 1 DIA) had to be excluded, as number of identifications in DIA-NN were below 60% of average as compared to the remaining replicates of this sample and setup.