Fig. 7: Web visualization and integrative analysis with cell type growth charts.
From: epDevAtlas: mapping GABAergic cells and microglia in the early postnatal mouse brain
a–d Neuroglancer based visualization enables users to a select cell types or atlas/annotations, b examine anatomical label ontology, c modify visualization setting (e.g., color, intensity), d with orthogonal 3D views. e-f Representative STPT images of Nr5a1 cells in layer 4 (L4) of the e primary somatosensory cortex, barrel fields, and f auditory cortex. Full resolution STPT data is accessible and viewable via online resource. g, Nr5a1 cell density across isocortical areas. h, Average 3D density data of Gad2 cells (top left; green; n = 7) and Cx3cr1 microglia (top right; in magenta; n = 5), overlaid (bottom left) registered to the P4 epDevAtlas template (gray background). White arrows highlight the border between isocortical and the olfactory cortex from the two cell types with the complementary density pattern. i Summary growth chart of GABAergic and microglial cell densities in the isocortex. Data are presented as mean values +/- s.d. (includes shaded area between error bars). See Source Data for Nr5a1 cell counts, density, volume measurements, and abbreviations.
