Fig. 3: CA1 subregional gene expression signatures across all sections.
From: Laminar organization of pyramidal neuron cell types defines distinct CA1 hippocampal subregions
Regional gene expression signatures are composed of quantitative single-molecule transcript expression within CA1 pyramidal cells across consecutive CA1 levels (HGEA Levels 69-90). Figure 2 tissue sections were analyzed to generate violin plots of log-normalized gene expression for CA1 layer markers Lrmp (CA1_1; yellow), Ndst4 (CA1_2; purple), Trib2 (CA1_3; green), and Peg10 (CA1_4; red). Each plot represents all cells from the designated tissue section at that level; data are not averaged or combined across animals, sections, or levels. a Violin plot gene expression signatures for CA1 tissue sections corresponding to HGEA Levels 69-85, separated by CA1 subregions (CA1d, CA1i, CA1v, and CA1vv). b Gene expression signatures for dorsal and ventral parts of the caudal CA1 corresponding to HGEA Levels 86-90. Numbers above each plot indicate the number of segmented cells analyzed at each HGEA level. Source data are provided as a Source Data file.
