Table 1 Sampling of ANTsX functionality
ANTsPy: Preprocessing | |
|---|---|
bias field correction | n4_bias_field_correction(...) |
image denoising | denoise_image(...) |
ANTsPy: Registration | |
intensity image registration | registration(...) |
label image registration | label_image_registration(...) |
image transformation | apply_transforms(...) |
template generation | build_template(...) |
landmark registration | fit_transform_to_paired_points(...) |
time-varying landmark reg. | fit_time_varying_transform_to_point_sets(...) |
integrate velocity field | integrate_velocity_field(...) |
invert displacement field | invert_displacement_field(...) |
ANTsPy: Segmentation | |
MRF-based segmentation | atropos(...) |
Joint label fusion | joint_label_fusion(...) |
diffeomorphic thickness | kelly_kapowski(...) |
ANTsPy: Miscellaneous | |
Regional intensity statistics | label_stats(...) |
Regional shape measures | label_geometry_measures(...) |
B-spline approximation | fit_bspline_object_to_scattered_data(...) |
Visualize images and overlays | plot(...) |
ANTsPyNet: Mouse-specific | |
brain extraction | mouse_brain_extraction(...modality="t2"...) |
brain parcellation | mouse_brain_parcellation(...) |
cortical thickness | mouse_cortical_thickness(...) |
super resolution | mouse_histology_super_resolution(...) |
