Table 2 Read depth statistics per sequencing modality and sample type

From: Microbiome analysis of 940 lung cancers in never-smokers reveals lack of clinically relevant associations

     

Range

Tumor-normal status

n

mean

median

Standard deviation

Low

High

16S

 Tumor

701

66,917

61,644

31,947

4024

199,104

 Normal

563

57,628

58,308

20,127

5166

194,827

RNAseq

 Tumor

661

129,635,580

127,478,501

38,900,833

22,429,409

610,965,375

 Normal

542

130,148,355

126,346,728

37,999,097

20,866,863

471,422,274

WGS

 Blood

447

942,996,840

908,564,834

189,070,286

680,579,372

1,814,647,436

 Tumor

811

2,348,912,898

2,292,893,294

330,902,893

727,878,974

4,382,840,738

 Normal

365

941,838,237

925,300,124

166,991,678

659,749,314

2,299,531,502

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