Fig. 8: GENCODE annotated gene analysis.
From: Clair3-RNA: a deep learning-based small variant caller for long-read RNA sequencing data
a Gene statistics for ONT dRNA004 HG004 and PacBio MAS-Seq HG004 are presented, stratified by GENCODE annotated gene regions. The data is categorized into wholly phased genes and those with no SNP errors, based on their overlap with callable high-confidence regions, with percentages reflecting the proportion of each category relative to its predecessor. b This panel shows gene error statistics for variant calls within protein-coding regions for both PacBio MAS-Seq HG004 and ONT dRNA004 HG004 datasets. The percentages are calculated relative to the total number of genes in the subset. c The number of wholly phased genes across various samples from PacBio and ONT platforms is illustrated, with percentages relative to the total number of annotated genes within the callable high-confidence regions. d This panel depicts genes without SNP, Indel, or switch errors from various samples in PacBio and ONT platforms, with percentages again relative to the total annotated genes in the callable high-confidence regions. Source data are provided as a Source Data file.
