Fig. 2: PeanutMAGIC pangenomic markers.
a Circos plot representing A (Chr.01-Chr.10, left side) and B (Chr.11-Chr.20, right side) subgenomes of cultivated peanut with outer orange bars representing scales in Mb. I, Heatmap of all variant sites within the PeanutMAGIC pangenome, per 1 Mb. II, Heatmap of all pangenome markers retained for analysis, per 1 Mb. Heat map of founder-specific markers: ‘Georgia-13M’ (13M, III), ‘SunOleic 97R’ (97R, IV), ‘GT-C20’ (C20, V), ‘Florida-07’ (F07, VI), ‘NC94022’ (NC, VII), ‘TifNV-High O/L’ (TNV, VIII), ‘Tifrunner’ (TR, XI), ‘GP-NC WS16’ (WS16, X), per 1 Mb. b The number of all markers, complex markers, InDel markers, and SNP markers. Blue represents the number of markers unique to a single founder and green represents the number of markers that are not exclusive to one founder as a percentage of the total bar. c The number of markers unique to each founder. Alternating color bands represent the number of markers per chromosome from Chr.01 (bottom) to Chr.20 (top). d r2 values across chromosomes of the PeanutMAGIC Core population. Values were calculated through a sliding window of 300 markers. Individual markers are represented by blue, green or orange lines. The black line represents 0.5 Mb averages of r2 values. e Neighbor Joining phylogenetic tree of the PeanutMAGIC Core using PeanutMAGIC pangenomic markers. Founders are highlighted in blue. Source data are provided as a Source Data file.
