Fig. 3: Differences in the rhizosphere microbiome of tomato and Panax notoginseng plants between Fusarium‑diseased and healthy conditions.
From: General variation in the Fusarium wilt rhizosphere microbiome
Beta‑diversity analysis of the rhizosphere bacterial communities from tomato (A) and Panax notoginseng (B) plants based on weighted UniFrac distances. C–H Significantly enriched ASVs in the diseased rhizosphere microbiome of Panax notoginseng (C–F) and tomato (G, H). Data are presented as box plots (center line, median; box limits, upper and lower quartiles (25th/75th percentiles); whiskers, min/max). Each data point represents an independent biological sample. Differential abundance was tested using the DESeq2 package (Benjamini–Hochberg FDR correction). Exact FDR‑adjusted P‑values for the displayed ASVs are: ASV5_P = 3.61 × 10−5, ASV434_P = 4.69 × 10−8, ASV133_P = 2.39 × 10−8, ASV36_P = 4.08 × 10−14, ASV847_T = 9.63 × 10−3, ASV60_T = 4.15 × 10−2. ***P < 0.001, **P < 0.01, *P < 0.05. Analysis in A, G, and H was performed on n = 15 diseased and n = 7 healthy independent rhizosphere samples. Analysis in B–F was performed on n = 10 independent rhizosphere samples. Source data are provided as a Source Data file.
