Fig. 3: Relative codon optimisation for genes involved in lipid or carbohydrate transport and metabolism.
From: Genomic and physiological signatures of adaptation in pathogenic fungi
The relative codon optimisation (S ratio) is compared between genera comprising both opportunistic pathogenic and saprotrophic species, except for Trichosporon. The opportunistic pathogens were grouped into common (Cutaneotrichosporon, Trichosporon, and Cryptococcus) or emerging (Apiotrichum) pathogens. Comparisons for each genus are provided in Supplementary Fig. 4. In order to consider intraspecific variation, the analysis considers several genomes for some species. The results considering 1 genome per species are consistent with the ones presented and are shown in Supplementary Fig. 18. Each boxplot indicates the median value (centre line), the 25th and 75th percentiles (lower and upper hinges), and the most extreme data points (whiskers) within 1.5 × inter-quartile range. Individual points beyond the whiskers are outliers.
