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Machine learning–driven design of engineered cilia enables hybrid operations in acoustic microrobots
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  • Published: 12 March 2026

Machine learning–driven design of engineered cilia enables hybrid operations in acoustic microrobots

  • Yun Ling  ORCID: orcid.org/0000-0002-3781-89011,
  • Yujing Lu  ORCID: orcid.org/0000-0001-8106-51101,
  • Joseph Rich  ORCID: orcid.org/0000-0002-6249-20932,
  • Mingyuan Liu3,
  • Xianchen Xu1,
  • Ty Naquin  ORCID: orcid.org/0009-0003-4897-26771,
  • Ying Chen  ORCID: orcid.org/0009-0000-4812-76581,
  • Shanglin Li1,
  • Ruoyu Zhong1,
  • Kaichun Yang1,
  • Shuaiguo Zhao1,
  • Qian Wu1,
  • Ke Jin1 &
  • …
  • Tony Jun Huang  ORCID: orcid.org/0000-0003-1205-33131 

Nature Communications , Article number:  (2026) Cite this article

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We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Applied physics
  • Biomedical engineering

Abstract

Microrobotic systems offer significant potential for precision medicine by enabling minimally invasive interventions in complex fluidic environments. However, effective operation in these settings requires actuators capable of more than simple linear or rotational motion, often necessitating programmable changes in both direction and shape. This remains a major challenge due to fundamental constraints in the design and control of microscale actuators, particularly in acoustic systems. Here, we introduce engineered cilia for hybrid operations microrobots, a class of acoustic microrobots that use geometry-tuned cilia and resonance-induced forces to execute complex motions such as bidirectional bending, controllable rotation, and adaptive morphing. The microrobots design is driven by a self-augmenting machine learning framework integrated with finite element analysis, enabling rapid prediction and optimization of geometry-resonance relationships across design space. This approach achieves >10⁵-fold reduction in prediction time and over 20-fold in memory savings, while maintaining >90% accuracy in peak amplitude and >98% in resonance frequency. Compliant mechanism strategies further expand the mechanical versatility of the microrobots, enabling programmable shape transformations tailored to specific tasks. These advances establish acoustic-driven microrobots as a scalable and efficient platform for intelligent microrobotic actuation in biomedical and microfluidic applications.

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Data availability

The data generated in this study have been deposited in Figshare. This study involves a large number of finite element analysis simulations across a wide parameter space. Due to file size limitations, the deposited dataset includes representative finite element simulation files and all processed data used to generate the figures and Supplementary Figs. Additional simulation files can be generated following the methods described in the manuscript.

Code availability

The code used in this study has been deposited in Code Ocean and is available at https://codeocean.com/capsule/2924489/tree.

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Acknowledgements

We acknowledge support from the National Institutes of Health (R01GM141055 (T.J.H.), R01GM145960 (T.J.H.), and R01GM144417 (T.J.H.)), National Science Foundation (CMMI-2104295 (T.J.H.)), and National Science Foundation Graduate Research Fellowship Program (2139754 (J.R.)).

Author information

Authors and Affiliations

  1. Thomas Lord Department of Mechanical Engineering and Materials Science, Duke University, Durham, NC, USA

    Yun Ling, Yujing Lu, Xianchen Xu, Ty Naquin, Ying Chen, Shanglin Li, Ruoyu Zhong, Kaichun Yang, Shuaiguo Zhao, Qian Wu, Ke Jin & Tony Jun Huang

  2. Department of Biomedical Engineering, Duke University, Durham, NC, USA

    Joseph Rich

  3. Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA

    Mingyuan Liu

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Contributions

Y.L. (Yun) led the project conceptualization, methodology development, and manuscript drafting. Y.L. (Yujing) fabricated micro devices and tested the materials modulus. Y.L. (Yun), X.X., and Q.W. performed the simulations. Y.L. (Yun) also conducted the machine learning model development. K.Y. and K.J. contributed to microscopy imaging. M. L. and R.Z. assisted with schematic illustrations. S.Z. acquired fluorescent images. Y.C. supported the methodological design and provided technical input. S.L. fabricated the microchannels for device fabrication. T.J.H. supervised the research. J.R., T.N., and T.J.H. reviewed and edited the manuscript. All authors provided feedback and contributed to the final version of the manuscript. We used ChatGPT (OpenAI) to help improve the clarity and readability of part of the manuscript after completing the initial draft and to polish the code.

Corresponding authors

Correspondence to Ying Chen or Tony Jun Huang.

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Competing interests

T.J.H. has co-founded a start-up company, Ascent Bio-Nano Technologies Inc., to commercialize technologies involving acoustofluidics and acoustic tweezers. All other authors declare no competing interests.

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Nature Communications thanks Prajwal Agrawal, Hongri Gu, and the other anonymous reviewer(s) for their contribution to the peer review of this work. A peer review file is available.

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Ling, Y., Lu, Y., Rich, J. et al. Machine learning–driven design of engineered cilia enables hybrid operations in acoustic microrobots. Nat Commun (2026). https://doi.org/10.1038/s41467-026-70048-4

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  • Received: 16 June 2025

  • Accepted: 04 February 2026

  • Published: 12 March 2026

  • DOI: https://doi.org/10.1038/s41467-026-70048-4

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