Table 1 Residues selected for CRISPR introduction of single amino acid missense mutations

From: Proteome-wide prediction of the functional impact of missense variants with ProteoCast

Naprt Variant

Variant class

Raw score

Rank overalla

Rank at residue

Residue class

Residue rank*

SIFT scores

G497P

Impactful

−8.75

1

1

Sensitive

1

0.00

K532G

Impactful

−8.73

2

1

Sensitive

11

0.00

E147V

Impactful

−8.33

52

1

Sensitive

21

0.00

I618P

Neutral

−1.54

3,322

1

Tolerant

5

0.21

A262F

Neutral

−0.84

1,670

3

Tolerant

2

0.05

  1. For each selected variant, we report its class (among impactful, mild and neutral), its raw predicted score and associated overall and relative ranks. In addition, we report the mutational sensitivity class (either tolerant or sensitive) and rank of the corresponding wild-type residue. For comparison, we indicate SIFT predicted normalised probabilities for the selected variants.
  2. *Residues with pLDDT < 70 are excluded from the ranking. This leaves us with 533 residues and 10,127 possible variants. The arrows indicate how the values are ordered to compute the ranks. For instance, a variant ranked 1 with an up arrow has the lowest (most negative) raw score. When some values are equal, they are assigned the same (minimum) rank. Sequencing validations of the five mutants are presented in Annex 1.