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Structures of dye-bound transthyretin amyloid fibrils from abdominal fat biopsies
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  • Published: 24 April 2026

Structures of dye-bound transthyretin amyloid fibrils from abdominal fat biopsies

  • Boyuan Ma  ORCID: orcid.org/0000-0002-6220-33861 na1,
  • Yuxuan Yao2,3 na1,
  • Qingping Wang4 na1,
  • Qinyue Zhao2,3,
  • Kaien Liu1,
  • Feiyang Chen2,3,
  • Hui Cheng1,
  • Ruxu Zhang  ORCID: orcid.org/0000-0003-3823-81484,
  • Cong Liu  ORCID: orcid.org/0000-0003-3425-66721,5 &
  • …
  • Dan Li  ORCID: orcid.org/0000-0002-1609-15392,3 

Nature Communications , Article number:  (2026) Cite this article

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We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Cryoelectron microscopy
  • Prions
  • Small molecules

Abstract

Transthyretin (TTR) amyloidosis is a protein misfolding disease characterized by amyloid fibril deposition in vital organs, leading to cardiomyopathy (ATTR-CM). Early diagnosis of ATTR-CM remains challenging due to lack of sensitive, rapid screening methods. Here, we report cryo-EM structures of TTR amyloid fibrils extracted from minimally invasive abdominal fat-pad biopsies of three living Ala97Ser ATTR-CM patients. The adipose-derived fibril structures closely mirror those from diseased post-mortem cardiac tissues, validating the use of fat-pad biopsies to investigate the atomic structure of TTR fibrils in living patients. Furthermore, we determined cryo-EM structures of TTR fibrils in complex with two amyloid-binding dyes, Congo Red (CR) and Thioflavin S (ThS), which are widely used in the clinical diagnosis of ATTR-CM. Both CR and ThS predominantly bind to a specific surface arginine site on the TTR fibril via electrostatic interactions. These findings provide structural insights into how small-molecule dyes bind TTR fibrils, offering a molecular foundation for the rational design of TTR-specific tracers to enable early and accurate diagnosis of TTR amyloidosis.

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Acknowledgements

We thank the Cryo-EM Center at the Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry for help with cryo-EM data collection. We thank Dingfei Yan and Dr. Haiteng Deng in Center of Protein Analysis Technology, Tsinghua University, for MS analysis. This work was supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (Grant No. XDB1060000 to C.L.), the National Natural Science Foundation (NSF) of China (32494764 and 92353302 to D.L.; 22425704 and 82188101 to C.L.; 32501045 to B.M.), Shanghai Basic Research Pioneer Project to C.L., the Shanghai Pilot Program for Basic Research - Chinese Academy of Science, Shanghai Branch (Grant No. JCYJ-SHFY-2022-005 to C.L.), the Postdoctoral Fellowship Program of CPSF (Grant No. GZB20230801 to B.M.), the China Postdoctoral Science Foundation (Grant No. 2024M753382 to B.M.), and the Shanghai Postdoctoral Excellence Program (Grant No. 2023725 to B.M.). Dr. Cong Liu is a SANS Exploration Scholar.

Author information

Author notes
  1. These authors contributed equally: Boyuan Ma, Yuxuan Yao, Qingping Wang.

Authors and Affiliations

  1. Interdisciplinary Research Center on Biology and Chemistry, State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, China

    Boyuan Ma, Kaien Liu, Hui Cheng & Cong Liu

  2. Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China

    Yuxuan Yao, Qinyue Zhao, Feiyang Chen & Dan Li

  3. Zhangjiang Institute for Advanced Study, Shanghai Jiao Tong University, Shanghai, China

    Yuxuan Yao, Qinyue Zhao, Feiyang Chen & Dan Li

  4. Department of Neurology, The Third Xiangya Hospital, Central South University, Changsh, China

    Qingping Wang & Ruxu Zhang

  5. Shanghai Academy of Natural Sciences (SANS), Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, China

    Cong Liu

Authors
  1. Boyuan Ma
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  2. Yuxuan Yao
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Corresponding authors

Correspondence to Ruxu Zhang, Cong Liu or Dan Li.

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Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

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Cite this article

Ma, B., Yao, Y., Wang, Q. et al. Structures of dye-bound transthyretin amyloid fibrils from abdominal fat biopsies. Nat Commun (2026). https://doi.org/10.1038/s41467-026-72441-5

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  • Received: 15 August 2025

  • Accepted: 15 April 2026

  • Published: 24 April 2026

  • DOI: https://doi.org/10.1038/s41467-026-72441-5

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