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Alternative enzymatic pathways to penicillin antibiotics
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  • Published: 30 April 2026

Alternative enzymatic pathways to penicillin antibiotics

  • Puja Saha1,2,
  • Guangcai Xu  ORCID: orcid.org/0000-0003-4074-51651,2,
  • Deepanjan Panda1,2,
  • Duncan Smith2,
  • Wei Li Thong2,
  • Luke Ward  ORCID: orcid.org/0009-0009-2391-32952,
  • Luis Bering2,
  • Sebastian Cuesta-Hoyos2,
  • Sarah A. Shepherd  ORCID: orcid.org/0000-0002-7321-12342 &
  • …
  • Jason Micklefield  ORCID: orcid.org/0000-0001-8951-48731,2 

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Subjects

  • Biocatalysis
  • Biosynthesis
  • Ligases

Abstract

The discovery of penicillin, more than a century ago, has been one of the most significant advances in medicine. Despite the growing threat of antimicrobial resistance, which has rendered many other antibiotics ineffective, penicillin derivatives remain among the most widely prescribed antibiotics. Penicillin is biosynthesised by a large nonribosomal peptide synthetase (NRPS) enzyme, which assembles a tripeptide precursor ACV. This intermediate is subsequently cyclised by isopenicillin N synthase (IPNS) to form penicillin. ACV is similar in structure to glutathione, a ubiquitous, tripeptide antioxidant essential for aerobic life forms. Unlike ACV, glutathione is assembled using simpler ligase enzymes rather than complex NRPS machinery. In this paper, we describe an alternative pathway to penicillins that uses stand-alone ligase and epimerase enzymes to generate peptide precursors, which can be transformed to penicillin derivatives using an engineered IPNS enzyme. Unlike the native NRPS assembly line, the ligase pathway provides direct access to therapeutically relevant penicillin G, penicillin V and ampicillin, which are currently produced by semi-synthesis.

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Acknowledgements

The Agilent Measurement Suite (Imperial) and the Michael Barber Center for Collaborative MS (MIB, UoM) are acknowledged for access to analytical instrumentation. We also thank Prof. Barrie Wilkinson (John Innes Centre) and Andrew Collis (GlaxoSmithKline) for helpful discussions. This work was funded by the Innovate UK grant BB/N023536/1 (J.M.), Biotechnology and Biological Sciences Research Council (BBSRC) grants BB/V016083/2 & BB/X002241/1 (J.M.), Royal Society Newton International Fellowship NIF\R1\201294 (P.S. and J.M.) and UKRI guarantee Marie Skłodowska-Curie Actions fellowship EP/Y023714/1 (G.X. and J.M.).

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Authors and Affiliations

  1. Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, UK

    Puja Saha, Guangcai Xu, Deepanjan Panda & Jason Micklefield

  2. Department of Chemistry and Manchester Institute of Biotechnology, The University of Manchester, Manchester, UK

    Puja Saha, Guangcai Xu, Deepanjan Panda, Duncan Smith, Wei Li Thong, Luke Ward, Luis Bering, Sebastian Cuesta-Hoyos, Sarah A. Shepherd & Jason Micklefield

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  1. Puja Saha
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Corresponding author

Correspondence to Jason Micklefield.

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Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Cite this article

Saha, P., Xu, G., Panda, D. et al. Alternative enzymatic pathways to penicillin antibiotics. Nat Commun (2026). https://doi.org/10.1038/s41467-026-72466-w

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  • Received: 19 September 2025

  • Accepted: 15 April 2026

  • Published: 30 April 2026

  • DOI: https://doi.org/10.1038/s41467-026-72466-w

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