Abstract
Obesity and diabetes impose chronic stress on pancreatic β-cells, while reprogramming of islet-resident macrophages (iMACs) accelerates dysfunction. Here, we identify transfer RNA-derived fragments (tRFs) as previously unrecognized mediators of islet remodeling under metabolic stress. 5’tRFGlu(CTC) and 5’tRFGly(GCC) are elevated in β-cells and iMACs from db/db mice and in islets from individuals with type 2 diabetes; 5’tRFGlu(CTC) also rises in prediabetes and inversely correlates with insulin secretion. Lipotoxicity triggers 5’tRF biogenesis, and targeted inhibition of 5’tRFGlu(CTC) preserves β-cell viability and function under palmitate exposure. In a β-cell/macrophage co-culture model, β-cell contact shapes a distinct iMAC-like phenotype that shifts after palmitate treatment. Inhibiting 5’tRFGlu(CTC) in iMAC-like cells prevents their activation switch and protects β-cells from lipotoxicity. Mechanistically, 5’tRFGlu(CTC) interacts with RNA-binding proteins to control immune activation, extracellular matrix remodeling, and oxidative stress pathways. These findings position tRFs as central effectors of cellular stress responses in both endocrine and immune cells.
Similar content being viewed by others
Acknowledgements
We are grateful to Prof. Ping-Chih Ho (University of Lausanne) for technical and strategical advice on the analysis of macrophage immunometabolism. We thank Dr. Cédric Gobet, Dr. Lina Worpenberg and Prof. Felix Naef (École Polytechnique Fédérale de Lausanne) for sharing their knowledge and protocols for the analysis of tRNA levels and aminoacylation. We are grateful to Dr. Giulia Gliozzo, Dr. Lorenzo Carciero, Dr. Laura Soldovieri, Dr. Michela Brunetti and Dr. Emanuele Gentile (Catholic University of Sacred Heart, Rome, Italy) for technical assistance in human pancreas samples collection and in-vivo clinical metabolic evaluation. We are obliged to the numerous colleagues who contributed with insightful discussion and shared knowledge on various aspects of this study, notably Dr. Bilal Bayazit, Dr. Cécile Jacovetti (University of Lausanne) and Prof. Mariana Igoillo-Esteve (University of Brussels). Mass spectrometry-based proteomics work was performed by the Protein Analysis Facility of the Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland. Small RNA and mRNA sequencing were performed by the Lausanne Genomic Technologies Facility and FACS-sorting with the support of the Flow Cytometry Facility, University of Lausanne, Lausanne, Switzerland. C.C discloses support for the research of this work from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No. 101029421 – MATREX and from the faculty of Biology and Medicine, University of Lausanne under the Transition Grant 2023. R.R discloses support for the research of this work from Swiss National Science Foundation (grant number 310030_219252). T.M. and G.S. disclose support for the research of this work from the Italian Ministry of Health (GR-2018-12365577) and the Italian Ministry of University and Research (PNRR-PRIN2022 No. P2022EB5B8 and PRIN2022 No.2022FRBXHY). A.Gi. discloses support for the research of this work from the Italian Ministry of University and Research (PNRR-PRIN2022 Prot. P2022445ES; PRIN Prot. 2022TJWNLL, PNRR-MCNT2-2023-12378096).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Source data
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
About this article
Cite this article
Cosentino, C., Klein, R., Menoud, V. et al. 5’tRNA-derived fragments modulate β-cell homeostasis and islet macrophage activation in type 2 diabetes. Nat Commun (2026). https://doi.org/10.1038/s41467-026-72641-z
Received:
Accepted:
Published:
DOI: https://doi.org/10.1038/s41467-026-72641-z


