Abstract
The bacterial cell cycle relies on coordinated and dynamic interactions between division and peptidoglycan synthesis proteins. However, visualizing these interactions in vivo remains technically challenging. Here, we established fluorescence-lifetime imaging microscopy combined with Förster resonance energy transfer (FLIM-FRET) as a robust, spatially resolved technique to visualize protein interactions in living Staphylococcus aureus. We set up and validated the method using cytosolic and membrane-anchored control proteins, achieving FRET efficiencies of up to 40%. Using FLIM-FRET, we mapped protein interactions of the glycosyltransferase FtsW within the septal peptidoglycan-synthesizing complex. We confirmed its interaction with the cognate transpeptidase PBP1 and the regulatory protein DivIB. Notably, we found that FtsW also self-interacts, suggesting that septal peptidoglycan synthesis is performed by a complex of multimers, able to synthesize more than one glycan strand. Inhibition of peptidoglycan synthesis by directly targeting PBP1 with the beta-lactam antibiotic imipenem, but not by targeting the lipid II flippase, therefore depleting the FtsW-PBP1 substrate from the outer surface of the cell membrane, weakened FtsW-PBP1 interaction. This suggests that alterations in FtsW interactions result primarily from antibiotic-induced conformational changes or from uncoupling FtsW-PBP1 activities, resulting in the presence of uncrosslinked glycans, rather than merely from a loss of peptidoglycan synthesis activity.
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Acknowledgements
We are grateful for the help of Mark Hink (University of Amsterdam) and Volker Bushmann (Picoquant, Berlin) in setting up the data analysis pipeline. Additionally, we are grateful for the suggestions by Tanneke den Blaauwen (University of Amsterdam) after critically reading the manuscript. We thank Luke Lavis (Janelia Research Campus, Ashburn) for the generous gift of JF503-HTL and JF585-HTL. This study was funded by the European Research Council (ERC) through grants ERC-2017-CoG-771709 and ERC-2022-ADG 101096393 (to M.G.P.); by Fundação para a Ciência e a Tecnologia (FCT) through MOSTMICRO-ITQB R&D Unit (UIDB/04612/2020, UIDP/04612/2020 to ITQB-NOVA), LS4FUTURE Associated Laboratory (LA/P/0087/2020 to ITQB-NOVA), Individual Call to Scientific Employment Stimulus (2022.00548.CEECIND to N.Y.M.), Call for Exploratory Projects in All Scientific Domains 2023 (2023.12822.PEX, to N.Y.M.), PhD fellowship PD/BD/135480/2018 (to S.F.C.); by the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement N° 839596 (to S.S.) and by the Portuguese Platform of BioImaging (PPBI-POCI-01-0145-FEDER-022122). F.F. was supported by UIDB/04565/2020 and UIDP/04565/2020 of the Research Unit iBB-Institute for Bioengineering and Biosciences, and the project LA/P/0140/2020 of the Associate Laboratory i4HB-Institute for Health and Bioeconomy.
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Meiresonne, N.Y., Costa, S.F., Schäper, S. et al. FtsW protein-protein interactions visualized in live Staphylococcus aureus cells by FLIM-FRET. Nat Commun (2026). https://doi.org/10.1038/s41467-026-72752-7
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DOI: https://doi.org/10.1038/s41467-026-72752-7


