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Structural characterization of kappa-opioid receptor dimer in complex with two G proteins
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  • Published: 29 May 2026

Structural characterization of kappa-opioid receptor dimer in complex with two G proteins

  • Yuxi Zhao1,2 na1,
  • Chanjuan Xu  ORCID: orcid.org/0000-0002-5640-18963 na1,
  • Yue Wang  ORCID: orcid.org/0000-0002-3716-29221 na1,
  • Hong Shan1,
  • Jing Wang  ORCID: orcid.org/0009-0006-3929-92674,
  • Yuxuan Liu  ORCID: orcid.org/0009-0007-0799-32273,
  • Xin Luo3,
  • Junrui Li1,
  • Mingyang Li5,6,7,
  • Yini Liu5,
  • Kai Wu1,8,
  • Bryan L. Roth  ORCID: orcid.org/0000-0002-0561-65204,
  • Xi-Ping Huang  ORCID: orcid.org/0000-0002-2585-653X4,
  • H. Eric Xu  ORCID: orcid.org/0000-0002-6829-81441,2,9,
  • Jianfeng Liu  ORCID: orcid.org/0000-0002-0284-83773 &
  • …
  • Youwen Zhuang  ORCID: orcid.org/0000-0002-1380-80471,5,6,7 

Nature Communications (2026) Cite this article

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Subjects

  • Cryoelectron microscopy
  • G protein-coupled receptors

Abstract

The κ-opioid receptor (κOR) represents a promising non-addictive analgesic target due to its critical role in pain and reward pathways. Despite evidence of κOR dimerization, its molecular basis and pharmacological significance remain elusive. Here, we demonstrate stable κOR dimer formation in living cells and present cryo-electron microscopy structures of salvinorin A-bound κOR dimer complexed with two Gi proteins, revealing a parallel assembly distinct from previously characterized GPCR dimers that engage only single G protein. Multiple membrane lipids are positioned at the TM1-Helix 8 interface, where they make extensive contacts with both protomers and may contribute to the stability of the κOR dimer. Importantly, dimerization significantly enhances Gi protein recruitment to κOR in both potency and efficacy. We also demonstrate that salvinorin A, a non-nitrogenous agonist, binds similarly in monomeric and dimeric κOR, and identify Y3127.35 as a critical selectivity determinant across opioid receptors. These findings expand our understanding of opioid receptor pharmacology and signaling, providing a foundation for developing superior κOR-targeted therapeutics for pain and related disorders.

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Acknowledgements

The cryo-EM data of this study were collected at the Advanced Center for Electron Microscopy, Shanghai Institute of Materia Medica (SIMM). We thank all the staff at the center for their assistance in cryo-EM data collection. We also thank Shanghai Frontiers Science Center of Cellular Homeostasis and Human Diseases of Shanghai Jiao Tong University, School of Medicine, for the technical support.

Funding

This work was partially supported by grants from the National Natural Science Foundation of China (32400998 to Y.W., 32401002 to Y.W.Z., 32130022 and 82121005 to H.E.X., 32421003 to J.L.); the National Key R&D Program of China (2022YFA1302900 to H.E.X.; 2024YFA1307504 to Y.W.Z.); Strategic Priority Research Program of the Chinese Academy of Sciences Grant (No. XDB0830000, XDA0530000, XDB37030103 to H.E.X) ; Shanghai Municipal Science and Technology Major Project (2019SHZDZX02 to H.E.X.); the Shanghai Municipal Science and Technology Major Project (H.E.X.); the Young Elite Scientists Sponsorship Program by CAST (2023QNRC001 to Y.W.Z.); the Natural Science Foundation of Shanghai, China (23ZR1475300 to Y.W.Z.); the Sailing Program of Shanghai Venus Project (23YF1456700 to Y.W.Z.); the “Shanghai Jiao Tong University 2030” Project-Category C (WH510363003/017 to Y.W.Z.); the Innovative Research Team of High-Level Local Universities in Shanghai (Y.W.Z.); the Support of SANOFI Scholarship Program (Y.W.Z.); and the HE Research Fellowship (HERF2025011 to Y.W.Z.)

Author information

Author notes
  1. These authors contributed equally: Yuxi Zhao, Chanjuan Xu, Yue Wang.

Authors and Affiliations

  1. State Key Laboratory of Drug Research. Center for Structure and Function of Drug Targets, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China

    Yuxi Zhao, Yue Wang, Hong Shan, Junrui Li, Kai Wu, H. Eric Xu & Youwen Zhuang

  2. School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing, 210023, China

    Yuxi Zhao & H. Eric Xu

  3. Cellular Signaling laboratory, International Research Center for Sensory Biology and Technology of MOST, Key Laboratory of Molecular Biophysics of MOE, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China

    Chanjuan Xu, Yuxuan Liu, Xin Luo & Jianfeng Liu

  4. Department of Pharmacology, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC, 27599, USA

    Jing Wang, Bryan L. Roth & Xi-Ping Huang

  5. Department of Pharmaceutical and Artificial-Intelligence Sciences, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China

    Mingyang Li, Yini Liu & Youwen Zhuang

  6. Artificial Intelligence Clinical Research Center for drug discovery, Shanghai Key Laboratory of Flexible Medical Robotics, Tongren Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China

    Mingyang Li & Youwen Zhuang

  7. Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China

    Mingyang Li & Youwen Zhuang

  8. The Shanghai Advanced Electron Microscope Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China

    Kai Wu

  9. University of Chinese Academy of Sciences, Beijing, 100049, China

    H. Eric Xu

Authors
  1. Yuxi Zhao
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  2. Chanjuan Xu
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  3. Yue Wang
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  4. Hong Shan
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  5. Jing Wang
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  6. Yuxuan Liu
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  7. Xin Luo
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  8. Junrui Li
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  9. Mingyang Li
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  10. Yini Liu
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  11. Kai Wu
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  12. Bryan L. Roth
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  13. Xi-Ping Huang
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  14. H. Eric Xu
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  15. Jianfeng Liu
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  16. Youwen Zhuang
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Corresponding authors

Correspondence to H. Eric Xu, Jianfeng Liu or Youwen Zhuang.

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Competing interests

H.E.X. is the founder of Cascade Pharmaceutics. All the other authors declare no competing interests.

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Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

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Cite this article

Zhao, Y., Xu, C., Wang, Y. et al. Structural characterization of kappa-opioid receptor dimer in complex with two G proteins. Nat Commun (2026). https://doi.org/10.1038/s41467-026-73615-x

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  • Received: 10 August 2025

  • Accepted: 13 May 2026

  • Published: 29 May 2026

  • DOI: https://doi.org/10.1038/s41467-026-73615-x

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