Extended Data Fig. 6: Hypo-DMRs associated with maternally inherited alleles of imprinted genes.
From: Multilayered epigenetic control of persistent and stage-specific imprinted genes in rice endosperm
a, b, Venn diagrams showing the overlaps of maternal hypo-DMRs in CG and CHG contexts for MEGs (a) and PEGs (b). c, d, UpSet plots representing the combinations of the four genomic regions, promoter, downstream, gene body, and TSS, for maternal CG hypo-DMRs (left) and CG/CHG hypo-DMRs (right) in MEGs (c) and PEGs (d). Significant enrichment for maternal hypo-DMRs in combinations of genomic regions was tested using a hypergeometric test. P-values were adjustment by Bonferroni methods, *P < 1.0E-04, **P < 1.0E-08, ***P < 1.0E-16. e, Heatmap showing distribution of allelic weighted DNA methylation in CG (left) and CHG (right) contexts for maternal CG or CG/CHG hypomethylated imprinted genes. Colors in the left box represent different classes of imprinted genes: blue, persistent; yellow, stage-specific; gray, other genes.
