Extended Data Fig. 5: Transcriptional dynamics of regeneration fate changes.
From: Water availability positions auxin response maxima to determine plant regeneration fates
a, Schematic depicting 0.5 mm tissue harvesting and time points for Arabidopsis petiole wound sites under high and low water conditions for RNA-seq. b, The distribution of differentially expressed genes (DEGs) in response to high and low water conditions. c, Principal Component Analysis (PCA) of the gene expression data from the regeneration fate transcriptome. The two principal components (PC1 and PC2) explain 69% of the total variation in the regeneration transcriptome. Different colors indicate various time points after wounding (in hours). Data from three biological replicates (r1, r2, r3) per water condition (high (H) or low (L) water) per time point are shown. d, Clustering analysis of transcriptional dynamics under high and low water availability conditions (12 clusters in total). Lines represent the average expression levels of DEGs within each cluster. Representative genes for selected clusters are shown in the top right corner.
