Extended Data Fig. 4: Coordination gene expression patterns responding to pathogen infection in potato leaf. | Nature Plants

Extended Data Fig. 4: Coordination gene expression patterns responding to pathogen infection in potato leaf.

From: Host microenvironment in potato–Phytophthora infestans interaction revealed by single-cell spatiotemporal transcriptome

Extended Data Fig. 4

a, Bubble plot showing the enriched GO terms of the commonly upregulated (left panel) and down-regulated (right panel) genes across different cell types. The size of bubble represents the counts of genes within indicated GO terms, and the color indicated the P value adjusted with Benjamini-Hochberg method. Enrichment of GO terms were assessed using two-tailed Fisher’s exact test implemented in the clusterProfiler package. b, c, Line graph (b) and spatial visualization (c) showing the representative commonly up and down-regulated genes across different cell types. Scale bar, 100 μm. SMC, spongy mesophyll cell; UEC, upper epidermal cell; LEC, lower epidermal cell; VC, vascular related cell; PMC, palisade mesophyll cell.

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