Fig. 2: Taxonomic landscape of the porcine gut microbiome. | npj Biofilms and Microbiomes

Fig. 2: Taxonomic landscape of the porcine gut microbiome.

From: UPGG: expanding the taxonomic and functional diversity of the pig gut microbiome with an enhanced genome catalog

Fig. 2: Taxonomic landscape of the porcine gut microbiome.

a Taxonomic classification of 38,786 MAGs at different levels. b Consistency of species and genus level relationships between the PIGC and UPGG catalogs is assessed. c Bar graphs showing the number of species unique to UPGG and shared with PIGC across the highlighted lineages. d Box plots comparing estimated completeness of genomes for each lineage in PIGC and UPGG using CheckM. e A scatter plot compares the number of genomes for common species between UPGG and PIGC. The most abundant species marked in the UPGG. f Rarefaction and extrapolation curves for the pangenome size of two selected species, as determined using UPGG data. g The proportion of species detected within 26 prokaryotic phyla, categorized by their unclassified status, is presented. The numbers in parentheses denote the total species count within each respective phylum. h The number of MAGs in each kSGBs, and only the top 40 most represented kSGBs were displayed. The samples factor (i.e., sex, age) related to the MAGs per species is plotted.

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