Fig. 8: Function- and pathway-level community analysis of paired vaginal, endocervical and rectal microbiomes of women who cleared their Ct infection following antibiotic treatment.

A Function-level analysis shows the three functions that had significantly different relative abundances between baseline and follow-up microbiomes for the endocervix. No functions were significantly different for the vaginal or rectal sites. B Microbial contributions for each function and associated pathways are shown for baseline and follow-up. The species associated with each pathway are in Supplementary Table S13. C Pathway-level community analysis for pathways for each anatomic site that have a significant difference in relative abundance between baseline and follow-up. Species represented in the graphs are color-coded as per the columns to the right of the graphs. *P < 0.05; **P < 0.005.