Fig. 6: Statistics of representative MAGs (completeness, contamination, VF, and ARG content and abundance among bird individuals). | npj Biofilms and Microbiomes

Fig. 6: Statistics of representative MAGs (completeness, contamination, VF, and ARG content and abundance among bird individuals).

From: Gut microbiome profiling of a migratory Anser serrirostris population reveals two groups with distinct pathogen and ARG contents

Fig. 6

The phylogenetic trees were constructed using CVTree and visualized using iTOL. For Pseudomonas sp. bin58 (A), all RefSeq genomes with ANI > 80% were included in the phylogenetic analysis. For Salmonella bin89 (B) and Acinetobacter baumannii bin59 (D), the 100 RefSeq genomes with the highest ANI to each MAG were selected. For Vibrio parahaemolyticus bin35 (C), the top 100 genomes were selected, then near-identical (clonal) top hits with identical metadata (isolation source, location, date, and submitter) were dereplicated by retaining a single representative per clonal cluster prior to tree building.

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