Table 1 Differential mRNAs associated with preadipocytes and induced preadipocytes (adipocyte cell type)

From: Unravelling bovine preadipocyte differentiation and their three-dimensional cultivation for cellular agriculture

 

Gene symbol

Gene name

Preadipocytes TPM

Adipocytes TPM

A

HOXC8

Homeobox C8

13.20

11.16

HOXC9

Homeobox C9

23.83

20.31

TCF7L1

Transcription factor 7 like 1

22.17

15.19

FGF10

Fibroblast growth factor 10

5.59

3.69

EBF2

EBF transcription factor 2

3.68

5.89

SCARA5

Scavenger receptor class A member 5

7.22

6.91

B

SPARC

Secreted protein acidic and cysteine rich

9012.26

11789.35

MMP2

Matrix metallopeptidase 2

5395.59

5385.10

COL6A2

Collagen type VI alpha 2 chain

3262.67

3300.86

ANXA2

Annexin A2

1710.89

1542.41

LRP1

LDL receptor related protein 1

972.32

879.34

SERPINF1

Serpin family F member 1

734.37

692.15

ANGPTL2

Angiopoietin like 2

510.02

613.40

CAVIN1

Caveolae associated protein 1

450.96

361.84

LOX

Lysyl oxidase

249.31

394.80

MYO1C

Myosin IC

208.68

164.19

TSPO

Translocator protein

143.72

112.24

MPZL1

Myelin protein zero like 1

141.98

151.58

XDH

Xanthine dehydrogenase

133.04

148.29

CREB3L1

cAMP responsive element binding protein 3 like 1

124.32

101.93

CEBPB

CCAAT enhancer binding protein beta

148.18

102.17

KLF6

KLF transcription factor 6

142.42

106.99

SLC1A5

Solute carrier family 1 member 5

92.21

53.35

FGF7

Fibroblast growth factor 7

81.69

72.51

ACSL1

Acyl-CoA synthetase long chain family member 1

77.17

37.39

STAT6

Signal transducer and activator of transcription 6

73.83

54.74

POSTN

Periostin

67.00

78.62

TFE3

Transcription factor binding to IGHM enhancer 3

59.65

41.76

TRIP10

Thyroid hormone receptor interactor 10

40.18

45.45

ACADSB

Acyl-CoA dehydrogenase short/branched chain

40.04

55.77

CPXM1

Carboxypeptidase X, M14 family member 1

36.01

15.15

LPIN1

Lipin 1

34.83

5.06

AOC3

Amine oxidase copper containing 3

32.51

24.81

BCAT2

Branched chain amino acid transaminase 2

30.57

29.92

CITED1

Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1

29.67

21.41

ADAMTS5

ADAM metallopeptidase with thrombospondin type 1 motif 5

25.92

16.58

HOXC9

Homeobox C9

23.83

20.31

CYP27A1

Cytochrome P450 family 27 subfamily A member 1

23.13

28.73

RARRES2

Retinoic acid receptor responder 2

22.09

33.81

PNPLA2

Patatin like phospholipase domain containing 2

18.07

24.28

C3

Complement C3

15.19

8.14

PIKFYVE

Phosphoinositide kinase, FYVE-type zinc finger containing

14.41

12.70

ADRB2

Adrenoceptor beta 2

12.85

3.81

EGFR

Epidermal growth factor receptor

12.69

15.49

PTGES2

Prostaglandin E synthase 2

12.17

12.38

PPARG

Peroxisome proliferator activated receptor gamma

10.51

9.48

SOCS1

Suppressor of cytokine signalling 1

8.34

12.12

FZD4

Frizzled class receptor 4

8.24

21.97

ESM1

Endothelial cell specific molecule 1

7.65

7.44

TMEM26

Transmembrane protein 26

6.60

3.03

NQO1

NAD(P)H quinone dehydrogenase 1

6.45

14.29

CYP1B1

Cytochrome P450 family 1 subfamily B member 1

6.40

11.19

DPT

Dermatopontin

6.25

3.77

MT2A

Metallothionein 2A

6.12

22.63

PPARGC1A

PPARG coactivator 1 alpha

5.86

4.09

HSD11B1L

Hydroxysteroid 11-beta dehydrogenase 1 like

5.55

5.19

ZNF423

Zinc finger protein 423

5.55

4.14

EPSTI1

Epithelial stromal interaction 1

4.81

10.88

CFD

Complement factor D

4.75

11.63

P2RX5

Purinergic receptor P2X 5

4.40

2.13

CPPED1

Calcineurin like phosphoesterase domain containing 1

3.74

4.26

EBF2

EBF transcription factor 2

3.68

5.89

FABP4

Fatty acid binding protein 4, adipocyte

3.48

6.74

CIDEA

Cell death inducing DFFA like effector a

2.36

2.41

PLIN1

Perilipin 1

2.24

2.05

METRN

Meteorin, glial cell differentiation Regulator

2.15

2.03

AR

Androgen receptor

1.83

3.02

CDO1

Cysteine dioxygenase type 1

1.47

1.34

PDGFA

Platelet derived growth factor subunit A

1.13

0.98

  1. The table above shows genes that are specific or canonical markers for adipogenic progenitor cell type using the Panglao database (A) and canonical markers for adipocytes (B). TPM, transcript per million.
  2. TPM transcript per million.
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