Extended Data Fig. 10: Differentially expressed repeat elements identify distinct subpopulations of E13.5 germ cells.
From: Apoptosis in the fetal testis eliminates developmentally defective germ cell clones
a, Abridged table of repeat element markers for subpopulations defined by scRNA-seq clustering based on expression of non-repetitive elements. p value calculated by two-sided Wilcoxon rank-sum test. Expression from n=2,043 cells. Full table of markers available in source data. b, Expression of MD marker Nanos2, AP marker Rhox6, and LINE1 members across clusters identified by expression of non-repetitive elements. Predominant expression of Nanos2 in cluster 4 is characteristic of MD population. Predominant expression of AP marker Rhox6 in cluster 5 is characteristic of AP population. Violin plots display cell densities as shape and individual cells as dots. The number of cells (n) for each cluster are detailed in source data. c, Abridged table of repeat element markers for subpopulations defined by scRNA-seq based only on expression of repetitive elements. P value calculated by two-sided Wilcoxon rank-sum test. Expression from n=2,043 cells. Full table of markers available in source data. d, Expression of MD marker Nanos2, AP marker Rhox6, and LINE1 members across clusters identified only by expression of repeat elements. Violin plots display cell densities as shape and individual cells as dots. The number of cells (n) for each cluster are detailed in source data.
