Table 1 Genome assembly and annotation statistics of two Arabidopsis allotetraploids
From: Concerted genomic and epigenomic changes accompany stabilization of Arabidopsis allopolyploids
Sequence statistics | A. suecica (T + A) | Allo738 (T + A) |
|---|---|---|
Total length of contigs (bp) | 272,218,784 | 268,958,675 |
Total length of assemblies (bp) | 272,391,284 | 269,147,175 |
Length of largest 13 super-scaffolds | 263,860,340 | 265,394,178 |
Percentage of anchored (bp) | 96.90% | 98.60% |
Number of contigs | 380 | 470 |
Contig L50 (bp) | 6,555,646 | 6,799,294 |
Number of scaffolds | 269 | 218 |
Scaffold L50 (bp) | 19,847,963 | 19,689,293 |
Total length of assemblies (A) (bp) | 150,632,036 | 147,419,868 |
Total length of assemblies (T) (bp) | 120,857,189 | 121,174,287 |
Percentage of repeat sequences (A) | 26.1 | 25.0 |
Percentage of repeat sequences (T) | 22.9 | 23.0 |
Number (%) of TEs (A)a | 60,716 (20.9) | 68,541 (23.8) |
Number (%) of TEs (T)a | 35,893 (21.4) | 36,669 (21.6) |
Number of genes (A)a | 28,945 + 341 | 27,939 + 288 |
Number of genes (T)a | 25,834 + 316 | 26,553 + 73 |
Complete BUSCOs (%) (A) | 1,602 (99.2) | 1,548 (95.9) |
Complete BUSCOs (%) (T) | 1,589 (98.5) | 1,601 (99.2) |
