Fig. 3: Visualization of network and hub genes made with WGCNA and Cytoscape. | Nature Microbiology

Fig. 3: Visualization of network and hub genes made with WGCNA and Cytoscape.

From: Co-expression analysis reveals distinct alliances around two carbon fixation pathways in hydrothermal vent symbionts

Fig. 3: Visualization of network and hub genes made with WGCNA and Cytoscape.

The network (top) was made using these filters: edge weight filter >0.05, degree >2 and a nearest neighbour of 10, leaving 1,194 nodes (genes) and 16,271 edges in the network. Each hexagon represents a node, the connections are edges, with hub genes indicated by larger hexagons. Hub genes that were involved in metabolic pathways of interest were zoomed out, proportional to the MCC value. Colours indicate the module grouping for each node. Metabolic functions of note are listed for each module, along with the corresponding hub genes for that module (if present).

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