Fig. 5: Co-expression patterns in Endoriftia carbon and energy metabolism. | Nature Microbiology

Fig. 5: Co-expression patterns in Endoriftia carbon and energy metabolism.

From: Co-expression analysis reveals distinct alliances around two carbon fixation pathways in hydrothermal vent symbionts

Fig. 5: Co-expression patterns in Endoriftia carbon and energy metabolism.

Gene colours indicate neighbours to the rTCA cycle (yellow) or CBB (red); stars mark hub genes. Genes/complexes of unknown function/direction in vivo: Hdr-Flx, Hyd1e, Hyd3b, MBX, HOA, OTR, QFR/SQR, RNF, OGOR/PFOR isoforms and sreABC. Metabolite abbreviations: 6PGL, 6-phosphogluconolactone; Ru5P, ribulose 5-phosphate; RuBP, ribulose-1,5-bisphosphate; G3P, glyceraldehyde 3-phosphate; F6P, fructose 6-phosphate; G6P, glucose 6-phosphate; GLC, glucose; 3PG, 3-phosphoglycerate; 2PG, 2-phosphoglycerate; PEP, phosphoenolpyruvate; PYR, pyruvate; AcCoA, acetyl coenzyme A; OAA, oxaloacetate; Cit, citrate; Mal, malate; Fum, fumarate; IsoCit, isocitrate; aKg, alpha-ketoglutarate; Suc, succinate; SucCoA, succinyl coenzyme A; Glut, glutamate; Gln, glutamine; Tyr, tyrosine; Trp, tryptophan; Val, valine. Illustration credit: Daria Chrobok, DC SciArt.

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