Extended Data Fig. 5: Selected features in the models between health and disease.
From: Gut microbiome-mediated transformation of dietary phytonutrients is associated with health outcomes
Selected features of the machine learning models. Left: Bar plots showing the importance of the selected features. Dark colours indicate disease-associated features; light colours represent healthy control–associated features. Middle: SHAP value plot illustrating the impact of each feature on the model output, with features ordered by their importance. Right: Heatmap depicting species and their associated ECs from the stratified features in the left panel, with colours indicating whether the species significantly differentially abundant species (S), significantly differentially abundant ECs (S), number of associated phytonutrients (C), number of associated foods (F) and type of enzyme classes (Class). (a–c) Diseases analysed were inflammatory bowel disease (IBD; a), colorectal cancer (CRC; b) and non-alcoholic fatty liver disease (NAFLD; c).
