Extended Data Fig. 7: Summary of genome qualities for UHGG.
a, Number and proportion of genomes with completeness ≥ 90% and contamination ≤ 5% (left pie chart), that passed GUNC (center pie chart), and that met the NC criteria (right pie chart), in UHGG representative genomes (up) and non-redundant genomes (down). b, Distribution of the percentage of genomes that are not completeness ≥ 90% and contamination ≤ 5% (top), that did not pass GUNC (middle), and that did not meet the NC criteria (bottom) for each UHGG species with at least two non-redundant genomes. The distributions are either categorized by the number of non-redundant genomes included in each species (left) or not (right) (2 ≤ # < 10, n = 1,590; 10 ≤ # < 100, n = 877; ≥ 100, n = 319; Total, n = 2,786). Box lengths represent the interquartile range of the data, and whiskers extend to the lowest and highest values within 1.5 times the interquartile range from the first and third quartiles, respectively. The center bar represents the median. All the outliers are shown in the plots.
